[HTML][HTML] Codon usage bias
ST Parvathy, V Udayasuriyan, V Bhadana - Molecular biology reports, 2022 - Springer
… In plant genomes, a general bias exists in the use of specific dinucleotides and … Gender-specific
selective pressures on codon usage could alter gene evolution and structure, influencing …
selective pressures on codon usage could alter gene evolution and structure, influencing …
Distinct responses to rare codons in select Drosophila tissues
SR Allen, RK Stewart, M Rogers, IJ Ruiz, E Cohen… - Elife, 2022 - elifesciences.org
… tissuespecific codon usage, the tissue- apparent Codon Adaptation Index (taCAI), to reveal
a conserved enrichment for rare codon usage in the endogenously expressed genes of both …
a conserved enrichment for rare codon usage in the endogenously expressed genes of both …
05. The relationship between codon usage bias and salt resistant genes in Arabidopsis thaliana and Oryza sativa
MYK Barozai, AG Kakar, M Din - Pure and Applied Biology (PAB), 2021 - thepab.org
… This research is based on synonymous codon usage and its relation with the salt resistant
genes. The codon usage directly affects the level or even direction of changes in protein …
genes. The codon usage directly affects the level or even direction of changes in protein …
[HTML][HTML] Adaptation of codon and amino acid use for translational functions in highly expressed cricket genes
CA Whittle, A Kulkarni, N Chung, CG Extavour - Bmc Genomics, 2021 - Springer
… codon use varies among genes transcribed in different tissues. We recently found, for example,
that some optimal codons of highly transcribed genes … adaptation of codon use to local …
that some optimal codons of highly transcribed genes … adaptation of codon use to local …
[HTML][HTML] … of transcriptional coordination between mitochondrial and nuclear oxidative phosphorylation genes in the presence of two divergent mitochondrial genomes
… how nuclear OXPHOS genes coordinate with two divergent mitochondrial genomes in DUI
… , and synonymous codon usage in the mitochondrial and nuclear OXPHOS genes of the DUI …
… , and synonymous codon usage in the mitochondrial and nuclear OXPHOS genes of the DUI …
Mining of Microsatellites and Transcription Factors in Seabuckthorn (Hippophae Sp.) Transcriptomes
P Chaudhary, PC Sharma - The Seabuckthorn Genome, 2022 - Springer
… Further to elucidate the codon usage examination, only the tri… ORF region were examined
for codon usage of tri-nucleotide … reliable and reproducible gender-specific molecular markers …
for codon usage of tri-nucleotide … reliable and reproducible gender-specific molecular markers …
Gender determination of date palm
… Gender-specific PCR-based markers can be further used as an efficient tool for molecular
breeding of date palm. The in silico analysis of such fragments coupled with reverse genetic …
breeding of date palm. The in silico analysis of such fragments coupled with reverse genetic …
Distribution of simple sequence repeats, transcription factors, and differentially expressed genes in the NGS-based transcriptome of male and female seabuckthorn …
P Chaudhary, PC Sharma - Journal of Biomolecular Structure and …, 2023 - Taylor & Francis
… aiming to identify gender-specific markers exploited different … in ORF region to search for
codon usage of tri-nucleotide … ) was used to confirm the preferential codon usage within the …
codon usage of tri-nucleotide … ) was used to confirm the preferential codon usage within the …
Drought-induced circular RNAs in maize roots: separating signal from noise
J Xu, Q Wang, X Tang, X Feng, X Zhang, T Liu… - Plant …, 2024 - academic.oup.com
… 1st and 2nd nt of codons and phase-2 introns are introns between 2nd and 3rd nt of 156
codons. The control included randomly selected splicing sites on genes with ORFs (37.92%, χ2 …
codons. The control included randomly selected splicing sites on genes with ORFs (37.92%, χ2 …
Molecular Markers and DNA Barcoding in Moringa
NM Boopathi, M Raveendran - The Moringa Genome, 2021 - Springer
… quantitative trait loci localization in the plant genome, offered unique and promising avenues
… Identification of gender-specific plants, at the seedling stage itself, will significantly reduce …
… Identification of gender-specific plants, at the seedling stage itself, will significantly reduce …